PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 488739
Common NameARALYDRAFT_488739
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 327aa    MW: 35832.4 Da    PI: 6.3998
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
488739genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91e-173684355
     AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
            + GVr+++ +gr++AeIrdp++   + r++lg+f+ta eAa a+++a+++++g
  488739 36 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAHEAALAYDRAALSMRG 84
            56******.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.5E-343598IPR001471AP2/ERF domain
CDDcd000185.98E-303591No hitNo description
PROSITE profilePS5103220.6923592IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-283691IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-203692IPR016177DNA-binding domain
PRINTSPR003672.1E-73647IPR001471AP2/ERF domain
PfamPF008473.4E-113884IPR001471AP2/ERF domain
PRINTSPR003672.1E-75874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010102Biological Processlateral root morphogenesis
GO:0010432Biological Processbract development
GO:0010451Biological Processfloral meristem growth
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MGFALIHQNT STNTTTTTTT GERRGRRSKQ AEPGRFLGVR RRPWGRYAAE IRDPTTKERH  60
WLGTFDTAHE AALAYDRAAL SMRGTQARTN FVYTPTDVHT ILTNPNLHSL IVSPYNNNQS  120
LLPNSSPQFV IDHHPHYQNY HQPQQPKHTL PQTVLPAASF KTPVRHQSAD IQSFGNSPQN  180
SSSNGSLSSS LDEENNFFFS LTSEEHNNNS GYLDCIVPNH CLKPPPDAAT TQNLAGVSFT  240
TPAASKASES YGGCSNSYFE DGEMMMNHHH EFGSCDLSAM ITNYGAAAAS MSMDDYAIME  300
PQDLSSPSLA AFGDVVADTT GFYSVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-193691359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00520DAPTransfer from AT5G18560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0693280.0AC069328.1 Genomic Sequence For Arabidopsis thaliana Clone T28N17 From Chromosome V, complete sequence.
GenBankAY5608730.0AY560873.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g18560) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873902.10.0ethylene-responsive transcription factor ERF086
SwissprotQ6J9Q20.0ERF86_ARATH; Ethylene-responsive transcription factor ERF086
TrEMBLD7LXW60.0D7LXW6_ARALL; Ethylene-responsive transcription factor ERF086
STRINGfgenesh2_kg.6__1873__AT5G18560.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54872650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.11e-162ERF family protein